Molecular phylogenetics of myliobatiform fishes (Chondrichthyes: Myliobatiformes), with comments on the effects of missing data on parsimony and likelihood.

Mitochondrial DNA sequences from the 12S rRNA gene, four tRNA genes, and a portion of two protein coding genes were used to investigate the relationship of myliobatoid genera. In addition, we conducted an investigation of the sister group to the freshwater stingrays by sampling additional DNA sequences from GenBank. Consequently, two datasets were used to examine myliobatoid relationships. The first consisted of the genes sequenced in this study. The second dataset was compiled by combining the first dataset with cytochrome b sequences from GenBank. The second dataset, however, included a number of missing characters due to differences in sampling. The effect of the missing characters on both maximum parsimony and maximum likelihood analysis was investigated by conducting a simulation study. Results of the simulation study indicated that maximum likelihood was not sensitive to the missing data, whereas the accuracy of maximum parsimony analysis was expected to decrease. Phylogenetic analysis of this group had several areas concordant with morphological studies, however, the analysis also revealed two novel relationships. In addition, placement of two taxa (Gymnura and Himantura) were dependent both on the dataset and analytical method used.

Survey of the variation in alar and malar thorns in skates: Phylogenetic implications (Chondrichthyes: Rajoidei).

A total of 62 species, representing 24 of the 28 supraspecific taxa of skates, was surveyed for the presence, distribution, and structure of alar and malar thorns. The survey revealed that alar thorns are almost universally present in mature male skates, and that malar thorns are of two types that may have separate origins. The location and orientation of alar thorns differed in two major clades of skates (groups I and II). They were either exposed on the disc with the crown oriented obliquely to the long axis of the base or imbedded in slits in the integument and oriented parallel to the long axis of the base. Group I possessed the former type of thorns and, with several exceptions, group II possessed the latter type. Group I either lacked malar thorns or possessed malar thorns that were most likely derived from generalized placoid scales. Group II possessed, with several exceptions, malar thorns derived from enlarged placoid scales. Within group I the supraspecific taxa Atlantoraja and Rioraja possessed unique alar thorns that were reclined laterally and associated with lateral grooves in the integument. Within group II the supraspecific taxa Anacanthobatis, Cruriraja, Dipturus, Okamejei, Raja, the North Pacific Assemblage, and the Amphi-American Assemblage had a large barb on the distal section of the crown of the alar thorn that suggests that these taxa form a clade. The crown of the alar thorns of the latter five supraspecific taxa was undulatory, thus supporting their monophyletic status. Another assemblage within group II had ridges that ran most of the length of the crown of the alar thorns corroborating their monophyletic status. The survey also suggested that variation of integumentary grooves associated with the alar thorns in Bathyraja, and presence or absence of malar thorns in Psammobatis, may be phylogenetically informative. © 1996 Wiley-Liss, Inc.

Electric organs in skates: Variation and phylogenetic significance (Chondrichthyes: Rajoidei).

A total of 63 species of skates (Chondrichthyes: Rajoidei) were surveyed, along with three species of the outgroup (Chondrichtyes: Rhinobatoidei) for electric organs along the sides of the tail. All skate specimens examined possessed what appeared to be functional electric organs, and the three species of the outgroup lacked evidence of electric organs. The electric organs were tail-positive and arranged into horizontal columns divided by transverse septa. The electrocytes varied considerably within and among supraspecific taxa (subgenera and genera), but they could be broadly classified into cup-shape, modified cup-shape, intermediate-shape, and disc-shape cells, provided that the distinction was partially based on position of the electrocytes within their connective tissue chambers. The survey, in part, corroborates a phylogenetic hypothesis of skates and in some respects further resolves the hypothesis. The supraspecific taxa Atlantoraja and Rioraja have similar derived-type electrocytes, as do the five supraspecific taxa of Rajini, and Cruriraja and Anacanthobatis, and to a lesser extent the supraspecific taxa Arhynchobatis, Psammobatis, and Sympterygia, and the supraspecific taxa Notoraja, Pavoraja, and Pseudoraja, corroborating the hypothesis. The supraspecific taxa Amblyraja, Rajella, Leucoraja, Breviraja, and Dactylobatus were unresolved in the phylogenetic hypothesis, but the electrocyte survey suggested that Leucoraja, Breviraja, and Dactylobatus were derived with respect to Amblyraja and Rajella. © 1994 Wiley-Liss, Inc.